Automatic morphometric analysis of muscle fiber images. Zdenka Uhrikova This talk deals with automatization of measuring the morphometric data on the muscle fiber images obtained from electron microscopy. First, we describe the detection of the muscle fiber orientation using Fourier transform. Applying our extended thresholding method we detect the boundaries between myofibril constituents - A band, I band and Z line. Then we measure required morphometric data - distances between borders of constituents. Since we have available results of manual measurements, we compare them with our results. We also provide some stereological measurements and discuss the problems related to automatization of the complex stereological analysis.