10/07/2018 I have presented and successfully defended my PhD thesis.

27/06/2018 Our article Volume estimation from single images: an application to pancreatic islets was accepted in Image Analysis & Stereology journal.

25/05/2018 Our article Fast registration by boundary sampling and linear programming has been accepted at the MICCAI 2018.

25/05/2018 I presented Automatic image analyses in microscopy at Tohoku University.

07/05/2018 We have released public part of medical image registration dataset with user landmark annotations.


About me

My name is Jiří Borovec and actually I am a PhD candidate at CMP supervised by prof. Jan Kybic. My work is focused on Medical imaging and Computer vision, my research topic is

Automatic analysis of gene expressions in Drosophila microscopy images

Other field that I am interested in are: Computer vision, Machine Learning, Mobile robotic

Research & Grants

Selected presentations and posters:


Funding and Grants:

Software & Source code

Intern-ships [academic]

03/2017 - 08/2017 National Institute of Informatics (NII), Tokyo, Japan

07/2012 - 11/2012 Centro de Investigación Médica Aplicada (CIMA), Pamplona, Spain

03/2011 - 08/2011 Institut de Recherche en Informatique de Toulouse (IRIT) on Project NAVIG , Toulouse, France

Teaching & Reviewing

Teaching exercises: Reviewing for:


2011 - 2018 PhD candidate at Center for Machine Perception, CTU in Prague, Czechia
Topic: Image analyses microscopy images

2009 - 2011 Diplom Master (French) et Ing. (Czech), IUP Systemes Intelligents, UPS Toulouse III, France; and FM, TU of Liberec, Czech Rep.
Master thesis: Fusion of heterogeneous data for better positioning of visually impaired pedestrians

since 2014 MOOC platforms (Massive Open Online Courses - Coursera, edX, Udacity)


My profile on Google Scholar Citations or ResearchGate or Mendeley here...

© 2018 Jirka Borovec     #  

View StatCounter     #   Google analytics