21/10/2017 I have released code for pyImSegm releted to our last three publications.

20/10/2017 Our article Region growing using superpixels with learned shape prior was accepted to the special issue in SPIE JEI journal.

09/10/2017 Our article Supervised and unsupervised segmentation using superpixels, model estimation, and Graph Cut was accepted to the special issue in SPIE JEI journal.

22/08/2017 I have been provided a student travel award for MICCAI conference.

18/07/2017 Our article Detection and localization of Drosophila egg chambers in microscopy images was accepted to the MLMI 2017 workshop at MICCAI.


About me

My name is Jiří Borovec and actually I am a PhD candidate at CMP supervised by prof. Jan Kybic. My work is focused on Medical imaging and Computer vision, my research topic is

Segmentation and registration microscopy image

Other field that I am interested in are:


Selected presentations and posters :

Intern-ships (academic)

03/2017 - 08/2017 Inter-ship at National Institute of Informatics (NII), Japan

07/2012 - 11/2012 Inter-ship at Centro de Investigación Médica Aplicada (CIMA), Spain

03/2011 - 08/2011 Inter-ship at Institut de Recherche en Informatique de Toulouse (IRIT) on Project NAVIG , France

Teaching (exercises)


10/2011 -   now   PhD candidate at CMP, CTU in Prague on Topic: Segmentation and registration histological cuts, in Prague, Czech Rep.

09/2009 - 09/2011 Diplom Master (French) et Ing. (Czech), IUP Systemes Intelligents, Universite Paul Sabatier Toulouse III, France and Faculty of Mechatronics, Informatics and Interdisciplinary Studies, Technical University of Liberec, Czech Rep.
Master thesis: Fusion of heterogeneous data for better positioning of visually impaired pedestrians

since 2014 MOOC platforms (Massive Open Online Courses - Coursera, edX, Udacity)


My profile on Google Scholar Citations or ResearcherID or Mendeley here:

© 2017 Jirka Borovec