Jan Hering's Homepage

A portrait of me

Welcome to my homepage. I am currently working at post-doc position in the Biomedical Imaging Algorithms (BIA) group which is led by Prof. Jan Kybic. The group is part of the Center for Machine Perception (CMP), at the Department of cybernetics, Faculty of electrical engineering of the Czech Technical University in Prague.

Contacts:
Office E-215 (Building E, 2nd floor)


Address:
Czech Technical University in Prague
Faculty of Electrical Engineering
Department of Cybernetics
Karlovo namesti 13
121 35 Prague 2
Czech Republic

I also have a ResearchGate profile.

News

22.11.2016 | Rigorosum

I have successfully defended my doctoral thesis Robust Motion and Distortion Correction of Diffusion-weighted MR Images (HeiDok Link) at the 'Naturwissenschaftliche Gesamtfakultät' of the Heidelberg University, Germany

1.11.2016 | Started at post-doc position at CMP-BIA group

From the 1st of November, I have joined the Biomedical Imaging Algorithms group of Prof. Jan Kybic.

Projects

Multiple Instance Learning (MIL) for bone cancer detection (current)

One of the characteristics of multiple myeloma is the propagation of the disease into the bone marrow tissue. In clinical routine, the extent of bone marrow tissue infiltration is used for staging purposes. Since a thorough and complete annotation of all infiltrations is hard to accomplish, the problem of automatic infiltration detection can be formulated as a multiple-instance learning task.

Former projects

(Pre)processing of diffusion-weighted MR Images

Memetic registration scheme One of the crucial tasks for robust analysis of diffusion-weighted data is the task of correcting for motion and acquisition distortion. To achieve a robust correction scheme I have focused on developing an image registration method that can consider and efficiently combine the information from available image metrics. In the novel, multi-objective correction scheme, a local optimization method by traditional pair-wise image registration is considered together with a global, particle-swarm optimization method.

Related publications

IEEE TMI Paper 2016
Doctoral Thesis

Full brain tractography

MITK Diffusion

During my doctoral studies, I have contributed to the development and release-process of the MITK Diffusion application, an open-source solution for the processing of diffusion-weighted MR images.

Related publications

Clinical Imaging 2016
JCARS 2014 (Goch et al.)

GPGPU

While finishing my mathematics studies at the Heidelberg University, I worked as student apprentice in the group of Dr. Susanne Kroemker, where my projects focused on parallel computation using graphics cards. Next to the project, i have applied this technique in my diploma-thesis in the context of electro-magnetic navigation in endoscopy

Publications

First Author


Journals:

Hering J, Wolf I, Maier-Hein KH, Multi-Objective Memetic Search for Robust Motion and Distortion Correction in Diffusion MRI. IEEE TMI, 2016 DOI
Hering J, ..., Bickelhaupt S., Applicability and discriminative value of a semi-automatic 3D-spherical-volume for the assessment of the apparent-diffusion-coefficient in suspicious breast lesions - feasibility study. Clinical Imaging, 2016 DOI

Conferences:

Hering J, Wolf I, Meinzer HP, Stieltjes B, Maier-Hein (Fritzsche) KH. A quantitative evaluation of errors induced by reduced field-of-view in diffusion tensor imaging. CDMRI, MICCAI 2013 Workshops, Japan
Hering J, Wolf I, Meinzer HP, Maier-Hein KH. Model-based motion correction of reduced field of view diffusion MRI data. In: SPIE Medical Imaging, 2014.
Hering J, Neher PF, Meinzer HP, Maier-Hein KH. Erzeugung von Referenzdaten für Kopfbewegungskorrektur in Diffusion-MRI. In: Bildverarbeitung für die Medizin 2014.
Hering J, Wolf I, Moher Alsady T, Meinzer HP, Maier-Hein KH. A Memetic Search Scheme for Robust Registration of Diffusion-Weighted MR Images. In: Bildverarbeitung für die Medizin 2015
Hering J, Neher PF, Stiejltes B, Maier-Hein KH. DTI Tractography Challenge MICCAI 2014 – MITK Global Tractography

Abstracts:

Hering J, Neher PF, Meinzer HP, Maier-Hein KH. Construction of ground-truth data for head motion correction in diffusion MRI. Proc. Annual Meeting ISMRM, Mailand 2014