Curriculum vitae -- Jan KYBIC

July 8, 2008

Center for Machine Perception Department of Cybernetics Faculty of Electrical EngineeringCzech Technical University

Technick'a 2Praha 6, 166 27 Czech Republic

+420 2 2435 5721 (work) +420 2 2435 7385 (fax) kybic@fel.cvut.cz http://cmp.felk.cvut.cz/~kybic

Born on 18th January 1974 in Prague, Czech Republic. Male. Work experience since 2003 Senior researcher at CMP, FEE, Czech Technical University, Prague. 2001-2003 Post-doc position at INRIA, France, working on inverse problems

in MEG and EEG.

1992-1998 several part-time and summer jobs in software development and

system administration.

Education 1998-2001 PhD in biomedical image processing at Ecole Polytechnique F'ed'eralede Lausanne (EPFL), Switzerland, with thesis Biomedical Image

Registration by Elastic Warping. 1994-1998 Master (Engineer) in control engineering from Czech TechnicalUniversity (CTU)

, with honors, with thesis Kalman Filtering andSpeech Enhancement

Research interests Signal and image processing for biomedical applications, image registration, segmentation, splines and wavelets, speech processing and enhancement, computer vision, numerical methods, inverse problems, algorithm theory, parallelalgorithms, control theory.

Language skills Mother tongue Czech, fluent English, French, and Spanish, conversational knowledge of German and Italian, intermediate Russian, basic Portuguese.

Professional activities Associated Editor for IEEE Transactions on Medical Imaging. Article reviews forIEEE Transactions on Medical Imaging, IEEE Transactions on Image Processing, IEEE Transactions on Biomedical Engineering, Medical Image Analysis and various other journals and conferences. Member of IEEE, Czech TEX Users Group, CzechLinux Users Group. Organized the CVAMIA workshop at the ECCV conference in

2004, Prague; Local ACM Programming Contest at CTU in 1996-1999. Reviewer of PhD and Master theses. Collaborated on six projects funded by Czech grantagencies and in one European training network.

Pedagogical activities Teaching a Digital Image Processing and Medical Imaging courses. Lectures about medical and microscopy image processing. Two PhD students and seven Master students have successfully defended; currently advising four and co-advisingone PhD student.

Publications Journal articles:

[1] Martin Barva, Mari'an Uher^c'ik, Jean-Martial Mari, Jan Kybic, Jean-Ren'e

Duhamel, Herv'e Liebgott, V'aclav Hlav'a^c, and Christian Cachard, "Paral-lel integral projection transform for straight electrode localization in 3-d

ultrasound images," IEEE Transactions on Ultrasonics, Ferroelectrics, andFrequency Control (UFFC), vol. 55, no. 7, pp. 1559-1569, July 2008.

[2] Elisabeth Brusseau, Jan Kybic, Jean-Franc,ois D'eprez, and Olivier Basset,

"2-D locally regularized tissue strain estimation from radio-frequency ultrasound images: Theoretical developments and results on experimentaldata," IEEE Transactions on Medical Imaging, vol. 27, no. 2, pp. 145-160,

Feb. 2008. [3] Maureen Clerc and Jan Kybic, "Cortical mapping by Laplace-Cauchy transmission using a boundary element method.," Journal on Inverse Problems,vol. 23, pp. 2589-2601, Nov. 2007.

[4] Jan Petr, Jan Kybic, Michael Bock, Sven M"uller, and V'aclav Hlav'a^c, "Parallel image reconstruction using B-spline approximation (PROBER)," Mag-netic Resonance in Medicine

, vol. 58, no. 9, pp. 582-591, September 2007.

[5] Jan Kybic, Maureen Clerc, Olivier Faugeras, Renaud Keriven, and Th'eo Pa-padopoulo, "Generalized head models for MEG/EEG: BEM beyond nested

volumes," Physics in Medicine and Biology, vol. 51, no. 5, pp. 1333-1346, Feb. 2006, doi:10.1088/0031-9155/51/5/021.

[6] Jan Kybic, Maureen Clerc, Olivier Faugeras, Renaud Keriven, and Th'eoPapadopoulo, "Fast multipole acceleration of the MEG/EEG boundary

element method," Physics in Medicine and Biology, vol. 50, no. 19, pp.4695-4710, October 2005.

[7] Olivier Faugeras, Geoffray Adde, Guillaume Charpiat, Christophe

Chefd'Hotel, Maureen Clerc, Thomas Deneux, Rachide Deriche, Gerardo Hermosillo, Renaud Keriven, Pierre Kornprobst, Jan Kybic, ChristopheLenglet, Lucero Lopez-Perez, Th'eo Papadopoulo, Jean-Philippe Pons, Florent Segonne, Bertrand Thirion, David Tschumperle, Thierry Vieville, and Nicolas Wotawa, "Variational, geometric, and statistical methods for mod-eling brain anatomy and function," Neuroimage, vol. 23S1, pp. S46-S55,

2004, Special issue: Mathematics in Brain Imaging. [8] Jan Kybic, Maureen Clerc, Touffic Abboud, Olivier Faugeras, Renaud

Keriven, and Th'eo Papadopoulo, "A common formalism for the integral

formulations of the forward EEG problem," IEEE Transactions on MedicalImaging

, vol. 24, no. 1, pp. 12-28, Jan. 2005.

[9] Mar'ia Jes'us Ledesma-Carbayo, Jan Kybic, Manuel Desco, Andr'es Santos,Michael S"uhling, Patrick Hunziker, and Michael Unser, "Spatio-temporal

non-rigid registration for ultrasound cardiac motion estimation," IEEETransactions on Medical Imaging

, vol. 24, no. 9, pp. 1113-1126, Sept.2005.

[10] Jan Kybic and Michael Unser, "Fast parametric elastic image registration,"IEEE Transactions on Image Processing

, vol. 12, no. 11, pp. 1427-1442, November 2003.

[11] Jan Kybic, Thierry Blu, and Michael Unser, "Generalized sampling: A vari-ational approach. Part I -- Theory," IEEE Transactions on Signal Processing,

vol. 50, no. 8, pp. 1965-1976, August 2002. [12] Jan Kybic, Thierry Blu, and Michael Unser, "Generalized sampling: Avariational approach. Part II -- Applications," IEEE Transactions on Signal

Processing, vol. 50, no. 8, pp. 1977-1985, August 2002. [13] Jan Kybic, Philippe Th'evenaz, Arto Nirkko, and Michael Unser, "Unwarping of unidirectionally distorted EPI images," IEEE Transactions on MedicalImaging, vol. 19, no. 2, pp. 80-93, February 2000.

[14] Stanislav T*uma, Ji^r'i Neuwirth, E. ^Cumlivsk'a, J. Mali^s, Jan Kybic, J. ^Sanda,

M. Fricov'a-Poulov'a, T. Adla, and M. Polovin^c'ak, "N'izkod'avkov'a technika spir'aln'i CT plic v diagnostice metastatick'ych lo^ziskov'ych n'alez*u u d^et'i a vdorostov'em v^eku," ^Cesko-slovensk'a pediatrie, vol. 61, no. 4, pp. 179-185,

Mar. 2006.

Books and book chapters: [1] Tom'a^s Svoboda, Jan Kybic, and Hlav'a^c V'aclav, Image Processing, Analysisand Machine Vision -- A MATLAB Companion

, Thomson, Toronto, Canada,1 edition, September 2007.

[2] Jan Kybic and Michael Unser, Handbook of Biomedical Image Analysis: Reg-istration Models

, vol. 3 of Topics in Biomedical Engineering, chapter ElasticRegistration for Biomedical Applications, pp. 339-393, Kluwer Academic /

Plenum Publishers, New York, USA, 2005. [3] Milan ^Sonka, A. Ioannis Kakadiaris, and Jan Kybic, Eds., Computer Vi-sion and Mathematical Methods in Medical and Biomedical Image Analysis

(CVAMIA+MMBIA), number 3117 in Lecture Notes in Computer Science, Heidelberg, May 2004. Springer.

[4] V'aclav Hlav'a^c and Jan Kybic, Zdravotnick'a informatika, chapter Zpracov'an'i

obrazu po^c'ita^cem v medic'in^e, pp. 105-114, Karolinum, Univerzita Karlovav Praze, Ovocn'y trh 3-5, Praha 1, Sept. 2007, in Czech.

Conference articles:

[1] Jef Vandemeulebroucke, Patrick Clarysse, Jan Kybic, and David Sarrut,

"Estimating respiratory motion from cone-beam projections," in Proceed-ings of the First International Workshop on Pulmonary Image Analysis,

Matthew Brown, Marleen de Bruijne, Bram van Ginneken, Atilla Kiraly, Jan-Martin Kuhnigk, Cristian Lorenz, Kensaku Mori, and Joseph Rein-hardt, Eds., MorrisVille, USA, September 2008, pp. 83-92, Lulu.com.

[2] S. T*uma, J. Kybic, M. Dolej^s'i, J. Polovin^c'ak, J. Neuwirth, T. Adla, andE. ^Cumlivsk'a, "P^resnost po^c'ita^cem asistovan'e CT diagnostiky plicn'ich uzl*u

ve srovn'an'i s klasick'ymi postupy hodnocen'i," in ^Ces.-slov. Pediatr., Jihlava, Czech Republic, Sept. 2008, vol. 63, pp. 52-31, ^Cesk'a l'eka^rsk'a spole^cnostJ. E. Purkyn^e.

[3] T. Kazmar and J. Kybic, "Opacity quantification in cardiac angiogram

sequences," in BIOSIGNAL: Analysis of Biomedical Signals and Images, Ji^r'iJan, Ji^r'i Kozumpl'ik, and Ivo Provazn'ik, Eds., Brno, Czech Republic, June

2008, p. 66, VUTIUM Press, CDROM proceedings. [4] Mari'an Uher^c'ik, Jan Kybic, Herv'e Liebgott, and Christian Cachard, "Multi-resolution parallel integral projection for fast localization of a straight

electro de in 3d ultrasound images," in Proceedings of 2008 IEEE Inter-national Symposium on Biomedical Imaging: From Nano to Macro

, NewYork, US, May 2008, IEEE International Symposium on Biomedical Imaging (ISBI), pp. 33-36, IEEE Press. [5] Jan Kybic, "Fast no ground truth image registration accuracy evalua-tion: Comparison of bootstrap and Hessian approaches," in Proceedings

of 2008 IEEE International Symposium on Biomedical Imaging: From Nanoto Macro, New York, US, May 2008, pp. 792-795, IEEE Press.

[6] Martin Dolej^s'i, Jan Kybic, Michal Polovin^c'ak, and Stanislav T*uma, "Reducing false positive responses in lung nodule detector system by Asym-metric AdaBoost," in Proceedings of 2008 IEEE International Symposium

on Biomedical Imaging: From Nano to Macro, 3 Park Ave., 17th Floor, New York, NY 10016-5997, USA, May 2008, pp. 656-659, IEEE.

[7] Juan D. Garc'ia-Arteaga and Jan Kybic, "Regional image similarity criteria based on the Kozachenko-Leonenko entropy estimator," in CVPRW:Computer Vision and Pattern Recognition Workshops

, 445 Hoes Lane, Pis-cataway, NJ, U.S.A., June 2008, pp. 1-8, IEEE.

[8] Jakub Kr'atk'y and Jan Kybic, "Three-dimensional segmentation of bones

from CT and MRI using fast level sets," in SPIE MI 2008: Proceedingsof the SPIE Medical Imaging 2008 Conference, Joseph M. Reinhardt and

Josien P. W. Pluim, Eds., Bellingham, Washington, USA, February 2008, SPIE, vol. 6914 of Medical Imaging 2008: Image Processing, p. 10, SPIE,CD-ROM.

[9] Jan Kybic, "High-dimensional entropy estimation for finite accuracy data:

R-NN entropy estimator," in IPMI2007: Information Processing in MedicalImaging, 20th International Conference

, Nico Karssemeijer and Boudewijn Lelieveldt, Eds., Berlin, Heidelberg, Germany, July 2007, pp. 569-580,Springer.

[10] Jan Petr and Jan Kybic, "Continuous criterion for parallel MRI recon-struction using B-spline approximation (PROBER)," in Proceedings of SPIE,

Josien P. W. Pluim and Joseph M. Reinhardt, Eds., Bellingham, Washington, USA, February 2007, SPIE, vol. 6512 of Medical Imaging 2007: Imageprocessing, pp. 43-53, SPIE.

[11] Juan D. Garc'ia-Arteaga and Jan Kybic, "Automatic landmark detection forcervical image registration validation," in Proceedings of SPIE, Maryellen L.

Giger and Nico Karssemeijer, Eds., Bellingham, Washington, USA, February 2007, SPIE, vol. 6514 of Medical Imaging 2007: Computer-Aided Diag-nosis, p. 65142S, SPIE.

[12] Juan D. Garc'ia-Arteaga, Jan Kybic, Jia Gu, and Wenjing Li, "Geometric and information constraints for automatic landmark selection in col-poscopy sequences," in VISAPP 2007: Proceedings of the Second International Conference on Computer Vision Theory and Applications, Alpesh Ku-mar Ranchordas, Helder Ara'ujo, and Jordi Vitria, Eds., Set'ubal,Portugal, March 2007, INSTICC, pp. 333-338, INSTICC-Institute for Systems and Technologies of Information, Control and Communication.

[13] Jan Kybic, Olivier Faugeras, Maureen Clerc, and Theo Papadopoulo, "Neural mass model parameter identification for MEG/EEG," in Proceedings ofSPIE: Medical Imaging 2007. Physiology, Function, and Structure from Medical Imaging, A. Manduca and P. Hu Xiaoping, Eds., Bellingham, Washington, USA, Feb. 2007, SPIE, vol. 6511, pp. 0F-1-0F-9, SPIE.

[14] Martin Dolej^s'i and Jan Kybic, "Automatic two-step detection of pulmonary

nodules," in Proceedings of SPIE, Maryllen L. Giger and Nico Karssemeijer, Eds., Bellingham, Washington, USA, February 2007, vol. 6514 of MedicalImaging 2007: Computer-Aided Diagnosis, pp. 3j-1-3j-12, SPIE.

[15] S. T*uma, J. Neuwirth, M. Dolej^s'i, J. Kybic, K. Dan'i^ckov'a, M. Polovin^c'ak,J. ^Sanda, E. ^Cumlivsk'a, and J. Mali^s, "Mo^znost sni^zov'an'i d'avky ionizuj'ic'iho z'a^ren'i p^ri vy^set^ren'i n'adorov'ych onemocn^en'i plic u d^et'i a dorostu.," in ^Ces.-slov. Pediatr., Praha, Czech Republic, June 2007, num-ber 5, pp. 357-358, ^Cesk'a l'eka^rsk'a spole^cnost J. E. Purkyn^e.

[16] Daniel Smutek, Radim ^S'ara, ^St^ep'an Holinka, Jan Kybic, Ludv'ik Tesa^r, Jan

Jiskra, and Pavel Maruna, "Ultrasound image of chronic thyroiditis and itsrelation to antithyroid antibodies," in Proceedings of the 11th Congress of

the World Federation for Ultrasound in Medicine and Biology, Amsterdam, Holland, May-June 2006, World Federation for Ultrasound in Medicineand Biology, vol. 32 of Ultrasound in Medicine and Biology, p. 120, Elsevier.

[17] Jan Kybic and Daniel Smutek, "Image registration accuracy estimationwithout ground truth using bootstrap," in CVAMIA: Computer Vision Approaches to Medical Image Analysis, R. Beichel and M. Sonka, Eds. May 2006, number 3117 in Lecture Notes in Computer Science, pp. 61-72,Springer.

[18] Ignacio Arganda-Carreras, Carlos O. S. Sorzano, Roberto Marabini,Jose M. Carazo, Carlos Ortiz de Solorzano, and Jan Kybic, "Consistent and

elastic registration of histological sections," in CVAMIA: Computer VisionApproaches to Medical Image Analysis

, R. Beichel and M. Sonka, Eds., Hei-delberg, Germany, May 2006, number 3117 in Lecture Notes in Computer

Science, pp. 85-95, Springer, http://dx.doi.org/10.1007/11889762 8. [19] Jan Kybic, "Incremental updating of nearest neighbor-based highdimensional entropy estimation," in ICASSP2006, Pierre Duhamel and Luc Vandendorpe, Eds., Toulouse, France, May 2006, pp. III-804, IEEE,DVD proceedings.

[20] Martin Dolej^s'i and Jan Kybic, "Detection of pulmonary nodules in CT

scans," in BIOSIGNAL: Analysis of Biomedical Signals and Images, Ji^r'i Jan,Ji^r'i Kozumpl'ik, and Ivo Provazn'ik, Eds., Brno, Czech Republic, June 2006,

pp. 251-253, VUTIUM Press. [21] Jan Petr, Jan Kybic, V'aclav Hlav'a^c, Sven M"uller, and Michael Bock, "Fast

parallel MRI reconstruction using B-spline approximation (PROBER)," inProceedings of SPIE

, Michael J. Flynn and Jiang Hsieh, Eds., Bellingham,Washington, USA, February 2006, SPIE, vol. 6142 of Medical Imaging

2006: Physics of Medical Imaging, pp. 1251-1262, SPIE. [22] Jan Petr, Jan Kybic, Sven M"uller, Michael Bock, and V'aclav Hlav'a^c, "Parallel MRI reconstruction using B-spline approximation," in ISMRM '05:Proceedings of the 13th Scientific Meeting and Exhibition of International

Society for Magnetic Resonance in Medicine, 2118 Milvia Street, Berkeley, USA, May 2005, ISMRM, vol. 13, p. 2421, International Society for Magnetic Resonance in Medicine.

[23] Dimitris Glotsos, S. Tsantis, Jan Kybic, A. Daskalakis, P. Ravazoula,

I. Kalatzis, N. Dimitropoulos, D. Cavouras, and G. Nikiforidis, "Maximachain edge representation for nuclei detection in microscopy images of

thyroid nodules," in EMBEC 2005, Ji^r'i Hozman Peter Kneppo, Ed., Argentinska 38, 170 00, Prague, Czech Republic, November 2005, p. 0, In-ternational Federation for Medical and Biological Engineering.

[24] Martin Barva, Jan Kybic, Jean-Martial Mari, Christian Cachard, and V'aclac

Hlav'a^c, "Localizing metal electrode from 3D ultrasound data usingRANSAC and intensity priors," in IFMBE Proceedings EMBEC'05, 3rd European Medical and Biological Engineering Conference, Ji^r'i Hozman Peter Kneppo, Ed., Argentinska 38, 170 00, Prague, Czech Republic, Novem-ber 2005, vol. 11, p. 6, International Federation for Medical and Biological

Engineering, proceeding on CD only. [25] Mar'ia-Jes'us Ledesma-Carbayo, Andr'es Santos, Patricia Mahia, MiguelAngel Garcia-Fernandez, Jan Kybic, Malpica Norberto, Perez-David E., and Desco Manuel, "Longitudinal and radial regional strain obtained fromgray-scale conventional echocardiography," in Journal of the American

College of Cardiology, B. Lerman, Ed., Bethesda, USA, Mar. 2005, vol. 45,p. A255, Elsevier, supplement 1.

[26] Leila Muresan, Bettina Heise, Jan Kybic, and Erich Peter Klement, "Quantitative analysis of microarrays," in Proceedings of ICIP, 445 Hoes Lane,Piscataway, USA, September 2005, pp. 1274-1277, IEEE.

[27] Jan Kybic and Daniel Smutek, "Computational elastography from stan-dard ultrasound image sequences by global trust region optimization," in

Proceedings of IPMI, Lecture Notes in Computer Science, Milan ^Sonka and Gary Christensen, Eds., Heidelberg, Germany, July 2005, number 3565,pp. 299-310, Springer Verlag.

[28] Jan Kybic and Daniel Smutek, "Estimating elastic properties of tissues

from standard 2d ultrasound images," in Medical Imaging 2005: Ultra-sonic Imaging and Signal Processing, William F. Walker and Stanislav Y.

Emelianov, Eds., Bellingham, Washington, USA, February 2005, vol. 6 ofProgress in Biomedical Optics and Imaging, pp. 184-195, SPIE.

[29] Maureen Clerc, Geoffray Adde, Jan Kybic, Th'eo Papadopoulo, and JeanMichel Badier, "In vivo conductivity estimation with symmetric boundaryelements," in NFSI2005: 5th International Conference on Bioelectromagnetism and 5th International Symposium on Noninvasive Functional SourceImaging. May 2005, vol. 7, International Society for Bioelectromagnetism.

[30] Martin Barva, Jan Kybic, Jean-Martial Mari, Christian Cachard, and V'aclav

Hlav'a^c, "Automatic localization of curvilinear object in 3D ultrasound im-ages," in Medical Imaging 2005: Ultrasonic Imaging and Signal Processing,

William F. Walker and Stanislav Y. Emelianov, Eds., Bellingham, Washington, USA, February 2005, SPIE International Symposium on MedicalImaging, vol. 6 of Progress in Biomedical Optics and Imaging, pp. 455-462,

SPIE. [31] Maureen Clerc, Jean-Michel Badier, Geoffray Adde, Jan Kybic,

and Th'eo Papadopoulo, "Boundary element formulation for electrical impedance tomography," in CEMRACS 2004: Mathemat-ics and applications to biology and medicine, E. Canc`es and J.-F.

Gerbeau, Eds., 17, avenue du Hoggar, France, July-September 2004, vol. 14 of ESAIM: Proceedings, pp. 63-71, EDP Sciences,http://www.edpsciences.org/articles/proc/abs/2005/01/contents/contents.html.

[32] Jan Kybic, "High-dimensional mutual information estimation for image

registration," in ICIP'04: Proceedings of the 2004 IEEE International Confer-ence on Image Processing

, 445 Hoes Lane, Piscataway, NJ, U.S.A., October2004, IEEE Computer Society.

[33] Jan Kybic, Maureen Clerc, Olivier Faugeras, Geoffray Adde, Renaud

Keriven, and Th'eo Papadopoulo, "Accurate boundary element method for the electro- and magnetoencephalography forward problem," in BIOSIG-NAL 2004: 17-th Biennial International Eurasip Conference Proceedings, Ji^r'i

Jan, Ji^r'i Kozumpl'ik, and Ivo Provazn'ik, Eds., Brno, Czech Republic, June2004, pp. 121-123, VUTIUM Press.

[34] Jan Petr, V'aclav Hlav'a^c, Yehudah L. Werner, and Ji^r'i Moravec, "Tools for

Image Analysis of Gecko Skin," in BIOSIGNAL 2004: Analysis of Biomed-ical Signals and Images

, Ji^r'i Jan, Ji^r'i Kozumpl'ik, and Ivo Provazn'ik, Eds.,Brno, Czech Republic, June 2004, EURASIP, vol. 17, pp. 296-298, VUTIUM Press. [35] Martin Barva, Jean-Martial Mari, Jan Kybic, and Christian Cachard,

"Radial Radon transform for electrode localization in biological tissue,"in BIOSIGNAL: Analysis of Biomedical Signals and Images, Ji^r'i Jan, Ji^r'i

Kozumpl'ik, and Ivo Provazn'ik, Eds., Brno, Czech Republic, June 2004,EURASIP, pp. 299-301, VUTIUM Press.

[36] Martin Barva, Jan Kybic, Jean-Martial Mari, and Christian Cachard, "Ra-dial Radon transform dedicated to micro-object localization from radio

frequency ultrasound signal," in IEEE UFFC: Proceedings of the IEEE In-ternational Frequency Control Symposium and Exposition, Marjorie Passini Yuhas, Ed., 445 Hoes Lane, Piscataway, NJ 08855-1331 USA, August 2004, IEEE, pp. 1836-1839, IEEE Operations Center.

[37] Mar'ia Jes'us Ledesma-Carbayo, Andr'es Santos, Patricia Mahia, Miguel-Angel Garc'ia Fern'andez, Jan Kybic, Norberto Malpica, E. P'erez David,

and Manuel Desco, "Longitudinal and radial regional strain obtained from gray-scale conventional echocardiography," in Abstracts of EUROECHO, theEighth Annual Meeting of the European Association of Echocardiography,

Dec. 2004, number 1001, p. S151. [38] Mar'ia Jes'us Ledesma-Carbayo, Manuel Desco, Norberto Malpica, Jan Kybic, and Andr'es Santos, "Non rigid registration for myocardial motionanalysis," in 4th European Symposium on Biomedical Engineering (CDROM), June 2004.

[39] Mar'ia Jes'us Ledesma-Carbayo, Andr'es Santos, P. Mah'ia Casado, M. A.

Garc'ia Fern'andez, J. Kybic, E. P'erez David, M. Desco, and F. Sarnago Ce-bada, "Obtenci'on de las componentes axial y longitudinal del strain

mioc'ardico a trav'es de ecocardiograf'ia convencional en escala de grises," in XX Congreso Nacional de la SEC. Rev. Esp. Cardiol., 2004, number 67(Supl 2).

[40] Jan Kybic and Maureen Clerc, "Symmetric BEM and multiscale fast multipole method for the E/MEG problem," in NFSI 2003: Proceedings ofthe 4th International Symposium on Noninvasive Functional Source Imaging Within the Human Heart and Brain, V. Pizzella and G. L. Romani, Eds., Berlin, Germany, Sept. 2003, pp. 122-124, Organ of the German Societyfor Biomedical Engineering in VDE and Swiss and Austrian Societies for

Medical and Biomedical Engineering. [41] Geoffray Adde, Maureen Clerc, Renaud Keriven, and Jan Kybic, "Regularization for the inverse EEG/MEG problem using the symmetric boundaryelement method," in Proceedings of the 4th International Symposium on

Noninvasive Functional Source Imaging (NFSI), V. Pizzella and G. L. Romani, Eds., Berlin, Germany, September 2003, pp. 287-289, Organ of theGerman Society for Biomedical Engineering in VDE.

[42] Geoffray Adde, Maureen Clerc, Olivier Faugeras, Renaud Keriven, Jan Kybic, and Th'eo Papadopoulo, "Symmetric BEM formulation for the M/EEGforward problem," in Proceedings of IPMI, Lecture Notes in Computer Science, Alison Noble and Chris Taylor, Eds., Heidelberg, Germany, July 2003, pp. 524-535, Springer Verlag.

[43] Maureen Clerc, Alain Dervieux, Renaud Keriven, Olivier Faugeras, Jan Ky-bic, and Th'eo Papadopoulo, "Comparison of BEM and FEM methods for

the E/MEG problem," in Biomag 2002: Proceedings of the 13th Interna-tional Conference on Biomagnetism

, Hannes Nowak, Jens Haueisen, FrankGiessler, and Ralph Huonker, Eds., Germany, August 2002, pp. 688-690,

VDE Verlag GmbH. [44] Maureen Clerc, Renaud Keriven, Olivier Faugeras, Jan Kybic, and Th'eo Papadopoulo, "The fast multipole method for the direct E/MEG problem," inProceedings of the First 2002 IEEE International Symposium on Biomedical

Imaging: Macro to Nano (ISBI'02), 445 Hoes Lane, Piscataway, NJ, U.S.A.,July 2002, pp. 1023 - 1026, IEEE.

[45] Mar'ia Jes'us Ledesma-Carbayo, Jan Kybic, Michael S"uhling, P. Hunziger,

Manuel Desco, Andr'es Santos, and Michael Unser, "Cardiac ultrasound motion detection by elastic registration exploiting temporal coherence," inProceedings of the First 2002 IEEE International Symposium on Biomedical

Imaging: Macro to Nano (ISBI'02), 445 Hoes Lane, Piscataway, NJ, U.S.A., July 2002, pp. 585 - 588, IEEE.

[46] Mar'ia Jes'us Ledesma-Carbayo, J. Kybic, M. Desco, E. P'erez-David,

M. Unser, and A. Santos, "Evaluaci'on de la funcionalidad regionaldel ventr'iculo izquierdo mediante t'ecnicas de registro el'astico espaciotemporal," in XX Congreso Anual de la Soc. Esp. Ing. Biom'edica. November 2002, pp. 187-190, Univ. Zaragoza.

[47] Maureen Clerc, Olivier Faugeras, Renaud Keriven, Jan Kybic, and TP'eoPapadopoulo, "A level set method for the inverse EEG/MEG problem," in

Human Brain Mapping - 8th International Conference on Functional Map-ping of the Human Brain, June 2002, Available on CD-Rom in NeuroImage, Vol. 16, No. 2. [48] Jan Kybic, Thierry Blu, and Michael Unser, "Generalized sampling: A

variational approach," in Proceedings of the Fourth International Conferenceon Sampling Theory and Applications (SampTA'01), May 2001, pp. 151-

154. [49] Jan Kybic, Thierry Blu, and Michael Unser, "Variational approach to tomographic reconstruction," in Proceedings of the SPIE International Sym-posium on Medical Imaging: Image Processing (MI'01), Part I, M. Sonka

and K.M. Hanson, Eds., February 2001, vol. 4322 of Progress in BiomedicalOptics and Imaging

, pp. 30-39.

[50] Mar'ia Jes'us Ledesma-Carbayo, Jan Kybic, Manuel Desco, Andr'es Santos,and Michael Unser, "Cardiac motion analysis from ultrasound sequences

using non-rigid registration," in Proceedings of MICCAI, Wiro J. Niessenand Max A. Viergever, Eds. October 2001, pp. 889-896, Springer-Verlag.

[51] Jan Kybic and Michael Unser, "Multidimensional elastic registration ofimages using splines," in ICIP2000, Proceedings of International Conference

of Image Processing, September 2000, vol. II, pp. 455-458. [52] Jan Kybic, Philippe Th'evenaz, and Michael Unser, "Compensation of uni-directional geometric distortion in EPI using spline warping," in ICIP'99:

Proceedings of the 1999 IEEE International Conference on Image Processing, 445 Hoes Lane, Piscataway, NJ, U.S.A., October 1999, vol. II, pp. 168-172,IEEE Computer Society.

[53] Jan Kybic, Philippe Th'evenaz, and Michael Unser, "Multiresolution spline

warping for EPI registration," in Proceedings of the SPIE Conference onMathematical Imaging: Wavelet Applications in Signal and Image Processing

VII. July 1999, vol. 3813, pp. 571-579, SPIE. [54] Pavel Sovka, Petr Poll'ak, and Jan Kybic, "Extended spectral subtraction,"

in Proceedings of EUSIPCO'96, 1996, vol. 2, p. 963.

Supervised Master and PhD theses: [1] Martin Barva, Localization of Surgical Instruments in 3D Ultrasound Images,PhD Thesis CTU-CMP-2007-12, Center for Machine Perception, K13133

FEE Czech Technical University, Prague, Czech Republic, June 2007. [2] Jan Petr, Parallel Magnetic Resonance Imaging Reconstruction, Ph.D. thesis, Czech Technical University in Prague, Prague, Czech Republic, October2007.

[3] Helena Jansov'a, "Reconstruction of 3D surface from colonoscopic video,"

M.S. thesis, Center for Machine Perception, K13133 FEE Czech Technical University, Prague, Czech Republic, May 2008.

[4] Ji^r'i Mazanec, "Program pro prohl'i^zen'i a segmentaci 3D MRI dat," M.S. the-sis, Center for Machine Perception, K13133 FEE Czech Technical University,

Prague, Czech Republic, May 2008. [5] Tom'a^s Kazmar, "Opacity quantification in cardiac angiogram sequence,"

M.S. thesis, Faculty of Mathematics and Physics, Charles University, Prague,Czech Republic, May 2008.

[6] Marek Jasansk'y, "Paralelizace ^re^sen'i p^r'im'eho probl'emu EEG rekonstrukce

metodou BEM," MSc Thesis CTU-CMP-2007-11, Center for Machine Per-ception, K13133 FEE Czech Technical University, Prague, Czech Republic,

June 2007. [7] Ji^r'i Svoboda, "Porovn'an'i metod odhadov'an'i entropie pro registraci

obraz*u," MSc Thesis CTU-CMP-2007-11, Center for Machine Perception,K13133 FEE Czech Technical University, Prague, Czech Republic, May 2007.

[8] Martin Dolej^s'i, "Detection of pulmonary nodules from CT scans," MSc

Thesis CTU-CMP-2007-05, Center for Machine Perception, K13133 FEE Czech Technical University, Prague, Czech Republic, January 2007.