30/04/2019 I am leaving CMP (CTU in Prague) after almost 8 years;
I wish you only the best (not only in your research)!

11/04/2019 We have organised ISBI 2019 workshop and presented results of ANHIR challenge.

17/03/2019 The ANHIR image registration challenge went to final phase.

05/12/2018 The webpage for ANHIR image registration challenge is up and running.

14/10/2018 Our challenge proposal Automatic Non-rigid Histological Image Registration (ANHIR) has been accepted for ISBI 2019.


About me

My name is Jiří Borovec and actually I am a PhD candidate at CMP supervised by prof. Jan Kybic. My work is focused on Medical imaging and Computer vision, my research topic is

Automatic analysis of gene expressions in Drosophila microscopy images

Other field that I am interested in are: Computer vision, Machine Learning, Mobile robotic

Research & Grants

Selected presentations and posters:


Funding and Grants:

Software & Source code

Intern-ships [academic]

03/2017 - 08/2017 National Institute of Informatics (NII), Tokyo, Japan

07/2012 - 11/2012 Centro de Investigación Médica Aplicada (CIMA), Pamplona, Spain

03/2011 - 08/2011 Institut de Recherche en Informatique de Toulouse (IRIT) on Project NAVIG , Toulouse, France

Teaching & Reviewing

Teaching exercises: Reviewing for:


2011 - 2018 PhD in computer science at CMP, CTU in Prague, Czechia
Doctoral hesis: Analysis of microscopy images

2009 - 2011 Diplom Master (French) et Ing. (Czech), IUP Systemes Intelligents, UPS Toulouse III, France; and FM, TU of Liberec, Czech Rep.
Master thesis: Fusion of heterogeneous data for better positioning of visually impaired pedestrians

since 2014 MOOC platforms (Massive Open Online Courses - Coursera, edX, Udacity)


My profile on Google Scholar Citations or ResearchGate or Mendeley here...

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