Publications of my students

Publications of my students.

• Ignacio Arganda-Carreras

  1. Ignacio Arganda-Carreras, Carlos O. S. Sorzano, Roberto Marabini, Jose M. Carazo, Carlos Ortiz-de-Solorzano and Jan Kybic. "Consistent and Elastic Registration of Histological Sections." CVAMIA: Computer Vision Approaches to Medical Image Analysis, no. 3117, pp. 85-95, May 2006.

• Martin Barva

  1. Martin Barva, Marián Uherčík, Jean-Martial Mari, Jan Kybic, Jean-René Duhamel, Hervé Liebgott, Václav Hlaváč and Christian Cachard. "Parallel Integral Projection Transform for Straight Electrode Localization in 3-D Ultrasound Images." IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control (UFFC), vol. 55, no. 7, pp. 1559-1569, July 2008.
  2. Martin Barva, Jan Kybic, Hervé Liebgott, Christian Cachard and Václav Hlaváč. "Comparison of Methods for Tool Localization in Biological Tissue from 3D Ultrasound Data." IEEE Ultrasonics Symposium, vol. , no. , pp. 1983-1986, October 2006.
  3. Martin Barva, Jan Kybic, Jean-Martial Mari, Christian Cachard and Václac Hlaváč. "Localizing Metal Electrode from 3D Ultrasound Data Using RANSAC and Intensity Priors." IFMBE Proceedings EMBEC'05, 3rd European Medical and Biological Engineering Conference, vol. 11, no. 1, pp. 6, November 2005.
  4. Barva Martin, Kybic Jan, Mari Jean-Martial, Cachard Christian and Hlaváč Václav. "Automatic Localization of Curvilinear Object in 3D Ultrasound Images." SPIE Medical Imaging 2005: Ultrasonic Imaging and Signal Processing, vol. 6, no. 5750, pp. 455-462, February 2005.
  5. Barva Martin, Kybic Jan, Mari Jean-Martial and Cachard Christian. "Radial Radon Transform dedicated to Micro-object Localization from Radio Frequency Ultrasound Signal." IEEE UFFC: Proceedings of the IEEE International Frequency Control Symposium and Exposition, pp. 1836-1839, August 2004.
  6. Barva Martin, Mari Jean-Martial, Kybic Jan and Cachard Christian. "Radial Radon Transform for Electrode Localization in Biological Tissue." BIOSIGNAL: Analysis of Biomedical Signals and Images, pp. 299-301, June 2004.
  7. Barva Martin, Kybic Jan and Hlaváč Václav. "Localization of surgical instruments in biological tissue from 3D ultrasound images." CTU 2007: Proceedings of the Czech Technical University Workshop 2007, vol. 11, pp. 480-481, February 2007.
  8. Barva Martin. "Localization of Surgical Instruments in 3D Ultrasound Images." pp. 153, June 2007.

• Jiří Borovec

  1. Borovec J., Kybic J., Arganda-Carreras I., Sorokin D. V., Bueno G., Khvostikov A. V., Bakas S., Chang E. I., Heldmann S., Kartasalo K., Latonen L., Lotz J., Noga M., Pati S., Punithakumar K., Ruusuvuori P., Skalski A., Tahmasebi N., Valkonen M., Venet L., et al. "ANHIR: Automatic Non-rigid Histological Image Registration Challenge." IEEE Transactions on Medical Imaging, no. 10, pp. 3042-3052, October 2020.
  2. Dvořák J., Švihlík J., Kybic J., Radochová B., Janáček J., Kukal J., Borovec J. and Habart D.. "Volume estimation from single images: an application to pancreatic islets." Image Analysis & Stereology, vol. 37, no. 3, pp. 191-204, 2018.
  3. Borovec J., Kybic J. and Sugimoto A.. "Region growing using superpixels with learned shape prior." Journal of Electronic Imaging, 2017.
  4. Borovec J., Švihlík J., Kybic J. and Habart D.. "Supervised and unsupervised segmentation using superpixels, model estimation, and Graph Cut." Journal of Electronic Imaging, 2017.
  5. Borovec J., Muñoz-Barrutia A. and Kybic J.. "Benchmarking of image registration methods for differently stained histological slides." ICIP, October 2018.
  6. Kybic J. and Borovec J.. "Fast registration by boundary sampling and linear programming." MICCAI, vol. 11070, pp. 783-791, 2018.
  7. Borovec J., Kybic J. and Nava R.. "Detection and localization of Drosophila egg chambers in microscopy images." MLMI: Machine learning in medical imaging (MICCAI workshop), pp. 19-26, September 2017.(Accepted)
  8. Borovec J. and Kybic J.. "Binary pattern dictionary learning for gene expression representation in drosophila imaginal discs." MCBMIAA2016: workshop on mathematical and computational methods in biomedical imaging and image analysis, pp. 555-569, November 2016.
  9. Kybic Jan, Dolejší Martin and Borovec Jiří. "Fast registration of segmented images by normal sampling." CVPRW: BioImage Computing Workshop, pp. 11-19, 6 2015.
  10. Jan Kybic and Jiri Borovec. "Automatic simultaneous segmentation and fast registration of histological images." International Symposium on Biomedical Imaging (ISBI), pp. 774-777, April-May 2014.
  11. Borovec Jiří and Kybic Jan. "jSLIC : superpixels in ImageJ." Proc. of Computer Vision Winter Workshop 2014, pp. 1-4, February 2014.
  12. Borovec Jiří. "Fully automatic segmentation of stained histological cuts." 17th International Student Conference on Electrical Engineering, pp. 1-7, May 2013.
  13. Borovec Jiří, Kybic Jan, Bušta Michal, Ortiz-de-Solorzano Carlos and Muñoz-Barrutia Arrate. "Registration of multiple stained histological sections." Proceedings of 2013 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp. 1034-1037, April 2013.
  14. Borovec J.. "Automatic analysis of gene expressions in Drosophila microscopy images." 2018.
  15. Borovec Jiří. "Segmentation and registration of multiple stained histological sections - PhD Thesis Proposal." no. CTU-CMP-2013-23, pp. 34, September 2013.
  16. Borovec Jiří, Kybic Jan, Bušta Michal, Ortiz-de-Solorzano Carlos and Muñoz-Barrutia Arrate. "Registration of multiple stained histological sections." no. CTU-CMP-2013-03, pp. 10, January 2013.
  17. Borovec Jiří and Kybic Jan. "Segmentation for registration of histological cuts." no. CTU-CMP-2012-03, pp. 46, February 2012.

• Thomas Dietenbeck

  1. Thomas Dietenbeck, François Varray, Jan Kybic, Olivier Basset and Christian Cachard. "Neuromuscular fiber segmentation through particle filtering and discrete optimization." SPIE Medical Imaging, vol. 9034, pp. 90340B, February 2014.(Accepted)

• Maria Dobko

  1. Dobko M.. "Lung nodule and cancer detection in computed tomography scans using deep learning." 2019.

• Martin Dolejší

  1. Quellec Gwenole, Lee Kyungmoo, Dolejší Martin, Garvin Mona K., Abràmoff Michael D. and Sonka Milan. "Three-Dimensional Analysis of Retinal Layer Texture: Identification of Fluid-Filled Regions in SD-OCT of the Macula." IEEE Transactions on Medical Imaging, vol. 29, no. 6, pp. 1321-1330, June 2010.
  2. Tůma S., Kybic J., Dolejší M., Polovinčák J., Neuwirth J., Adla T. and Čumlivská E.. "Přesnost počítačem asistované CT diagnostiky plicních uzlů ve srovnání s klasickými postupy hodnocení." Čes.-slov. Pediatr., vol. 63, no. 7/8, pp. 31-52, September 2008.
  3. Neuwirth J., Polovinčák M., Kybic J., Tůma S., Čumlivská E., Suchánek V., Adla T., Hlaváč V. and Dolejší M.. "Solitární a mnohočetné plicní uzly - analýza morfologických vlastností na průkaz jejich etiologie, pravidla sledování malých uzlů, jejich detekce pomocí semiautomatické analýzy CT obrazu - vlastní zkušenosti a přehled literatury." Česká radiologie, vol. 60, no. 5, pp. 311-320, March 2006.
  4. Kybic Jan, Dolejší Martin and Borovec Jiří. "Fast registration of segmented images by normal sampling." CVPRW: BioImage Computing Workshop, pp. 11-19, 6 2015.
  5. Dolejší Martin, Kybic Jan, Abràmoff Michael D. and Sonka Milan. "Semi-automated segmentation of Symptomatic Exudate-Associated Derangements (SEADs) in 3D OCT using layer segmentation." Analysis of Biomedical Signals and Images - Proceedings of Biosignal 2010, pp. NA, June 2010.
  6. Dolejší Martin, Kybic Jan, Polovinčák Michal and Tůma Stanislav. "The Lung TIME-Annotated Lung Nodule Dataset and Nodule Detection Framework." Proceedings of SPIE, vol. 7260, pp. 72601U, February 2009.
  7. Dolejší Martin, Kybic Jan, Polovinčák Michal and Tůma Stanislav. "Reducing false positive responses in lung nodule detector system by Asymmetric AdaBoost." Proceedings of 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp. 656-659, May 2008.
  8. Dolejší Martin and Kybic Jan. "Automatic two-step detection of pulmonary nodules." Proceedings of SPIE, vol. 6514, pp. 3j-1-3j-12, February 2007.
  9. Dolejší Martin and Kybic Jan. "Detection of Pulmonary Nodules in CT Scans." BIOSIGNAL: Analysis of Biomedical Signals and Images, pp. 251-253, June 2006.
  10. Dolejší Martin, Kybic Jan, Polovinčák Michal and Tůma Stanislav. "Algoritmy CAD systému pro CT vyšetření plic na plicní uzly." Radiační zátěž pacientů při CT vyšetření a problematika jejího stanovení, pp. 29-31, September 2008.
  11. Tůma S., Neuwirth J., Dolejší M., Kybic J., Daníčková K., Polovinčák M., Šanda J., Čumlivská E. and Mališ J.. "Možnost snižování dávky ionizujícího záření při vyšetření nádorových onemocnění plic u dětí a dorostu." Čes.-slov. Pediatr., no. 5, pp. 357-358, June 2007.
  12. Dolejší Martin. "Detection of Pulmonary Nodules from CT Scans." pp. 65, January 2007.
  13. Dolejší Martin. "Comparison of nodule candidate detecting algorithms." no. CTU-CMP-2012-02, pp. 23, January 2012.
  14. Dolejší Martin, Kybic Jan, Abràmoff Michael D. and Sonka Milan. "Semi-automated segmentation of Symptomatic Exudate-Associated Derangements (SEADs) in 3D OCT using layer segmentation." 2010.
  15. Dolejší Martin, Kybic Jan, Polovinčák Michal and Tůma Stanislav. "Automatic Detection of Pulmonary Nodules from CT Images." Endosono, 2009.

• Martin Dolejší

  1. Quellec Gwenole, Lee Kyungmoo, Dolejší Martin, Garvin Mona K., Abràmoff Michael D. and Sonka Milan. "Three-Dimensional Analysis of Retinal Layer Texture: Identification of Fluid-Filled Regions in SD-OCT of the Macula." IEEE Transactions on Medical Imaging, vol. 29, no. 6, pp. 1321-1330, June 2010.
  2. Tůma S., Kybic J., Dolejší M., Polovinčák J., Neuwirth J., Adla T. and Čumlivská E.. "Přesnost počítačem asistované CT diagnostiky plicních uzlů ve srovnání s klasickými postupy hodnocení." Čes.-slov. Pediatr., vol. 63, no. 7/8, pp. 31-52, September 2008.
  3. Neuwirth J., Polovinčák M., Kybic J., Tůma S., Čumlivská E., Suchánek V., Adla T., Hlaváč V. and Dolejší M.. "Solitární a mnohočetné plicní uzly - analýza morfologických vlastností na průkaz jejich etiologie, pravidla sledování malých uzlů, jejich detekce pomocí semiautomatické analýzy CT obrazu - vlastní zkušenosti a přehled literatury." Česká radiologie, vol. 60, no. 5, pp. 311-320, March 2006.
  4. Kybic Jan, Dolejší Martin and Borovec Jiří. "Fast registration of segmented images by normal sampling." CVPRW: BioImage Computing Workshop, pp. 11-19, 6 2015.
  5. Dolejší Martin, Kybic Jan, Abràmoff Michael D. and Sonka Milan. "Semi-automated segmentation of Symptomatic Exudate-Associated Derangements (SEADs) in 3D OCT using layer segmentation." Analysis of Biomedical Signals and Images - Proceedings of Biosignal 2010, pp. NA, June 2010.
  6. Dolejší Martin, Kybic Jan, Polovinčák Michal and Tůma Stanislav. "The Lung TIME-Annotated Lung Nodule Dataset and Nodule Detection Framework." Proceedings of SPIE, vol. 7260, pp. 72601U, February 2009.
  7. Dolejší Martin, Kybic Jan, Polovinčák Michal and Tůma Stanislav. "Reducing false positive responses in lung nodule detector system by Asymmetric AdaBoost." Proceedings of 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp. 656-659, May 2008.
  8. Dolejší Martin and Kybic Jan. "Automatic two-step detection of pulmonary nodules." Proceedings of SPIE, vol. 6514, pp. 3j-1-3j-12, February 2007.
  9. Dolejší Martin and Kybic Jan. "Detection of Pulmonary Nodules in CT Scans." BIOSIGNAL: Analysis of Biomedical Signals and Images, pp. 251-253, June 2006.
  10. Dolejší Martin, Kybic Jan, Polovinčák Michal and Tůma Stanislav. "Algoritmy CAD systému pro CT vyšetření plic na plicní uzly." Radiační zátěž pacientů při CT vyšetření a problematika jejího stanovení, pp. 29-31, September 2008.
  11. Tůma S., Neuwirth J., Dolejší M., Kybic J., Daníčková K., Polovinčák M., Šanda J., Čumlivská E. and Mališ J.. "Možnost snižování dávky ionizujícího záření při vyšetření nádorových onemocnění plic u dětí a dorostu." Čes.-slov. Pediatr., no. 5, pp. 357-358, June 2007.
  12. Dolejší Martin. "Detection of Pulmonary Nodules from CT Scans." pp. 65, January 2007.
  13. Dolejší Martin. "Comparison of nodule candidate detecting algorithms." no. CTU-CMP-2012-02, pp. 23, January 2012.
  14. Dolejší Martin, Kybic Jan, Abràmoff Michael D. and Sonka Milan. "Semi-automated segmentation of Symptomatic Exudate-Associated Derangements (SEADs) in 3D OCT using layer segmentation." 2010.
  15. Dolejší Martin, Kybic Jan, Polovinčák Michal and Tůma Stanislav. "Automatic Detection of Pulmonary Nodules from CT Images." Endosono, 2009.

• Branislav Doubek

  1. Doubek B.. "Implementation of Multiple Instance Learning using Markov Networks." 2020.

• Juan David García-Arteaga

  1. García-Arteaga Juan David, Kybic Jan and Li Wenjing. "Automatic Colposcopy Video Tissue Classification Using Higher Order Entropy Based Registration." Computers in Biology and Medicine, vol. 41, no. 10, pp. 960-970, October 2011.
  2. García-Arteaga Juan D. and Kybic Jan. "Regional Image Similarity Criteria Based on the Kozachenko-Leonenko Entropy Estimator." CVPRW: Computer Vision and Pattern Recognition Workshops, pp. 1-8, June 2008.
  3. García-Arteaga Juan D., Kybic Jan, Gu Jia and Li Wenjing. "Geometric and Information Constraints for Automatic Landmark Selection in Colposcopy Sequences." VISAPP 2007: Proceedings of the Second International Conference on Computer Vision Theory and Applications, pp. 333-338, March 2007.
  4. Juan D. García-Arteaga and Jan Kybic. "Automatic landmark detection for cervical image registration validation." Medical Imaging 2007: Computer-Aided Diagnosis, Proceedings of SPIE, vol. 6514, no. 1, pp. 65142S, February 2007.
  5. García-Arteaga Juan David, Kybic Jan and Li Wenjing. "Elastic Image Registration for Movement Compensation in Digital Colposcopy." BIOSIGNAL: Analysis of Biomedical Signals and Images, pp. 236-238, June 2006.
  6. García-Arteaga Juan David. "Multichannel Image Information Similarity Measures: Applications to Colposcopy Image Registration." pp. 120, May 2013.

• Vatsal Goel

  1. Goel V.. "Predicting Cancer with a Recurrent Visual Attention Model for Histopathology Images." 2019.

• Miroslav Hekrdla

  1. Kostelanský M., Manzano-Rodríguez A., Kybic J., Hekrdla M., Dvorský O., Kozel J., Baurová P., Pakizer D. and Školoudík D.. "Differentiating between stable and progressive carotid atherosclerotic plaques from in-vivo ultrasound images using texture descriptors." SIPAIM: International Symposium on Medical Information Processing and Analysis, 2021.

• Jan Hering

  1. Chalupský J., Vozda V., Hering J., Kybic J., Burian T., Dziarzhytski S., Frantálová K., Hájková V., Jelínek Š, Juha L., Keitel B., Kuglerová Z., Kuhlmann M., Petryshak B., Ruiz-Lopez M., Vyšín L., Wodzinski T. and Plönjes E.. "Deep learning for laser beam imprinting." Optics Express, 2023.(Accepted)
  2. Hering J. and Kybic J.. "Generalized multiple instance learning for cancer detection in digital histopathology." ICIAR: International Conference on Image Analysis and Recognition, pp. 274-282, 2020.
  3. Hering J. and Kybic J.. "Multiple Instance Learning Via Deep Hierarchical Exploration for Histology Image Classification." ISBI: International Symposium Biomedical Imaging, pp. 235-238, 2020.
  4. Hering J., Kybic J. and Lambert L.. "Detecting multiple myeloma via generalized multiple-instance learning." SPIE Medical Imaging: Image Processing, vol. 10574, pp. 10574-6, January 2018.

• Hanna Hlushak

  1. Švihlík J., Kybic J., Dvořák J., Habart D., Hlushak H. and Radochová B.. "Langerhans islet volume estimation from 3D optical projection tomography." MCBMIAA2016: Workshop on Mathematical and Computational Methods in Biomedical Imaging and Image Analysis, November 2016.(Accepted)

• Martin Hrubý

  1. Martin Hrubý. "Detection of changes in 3D MRI data using image registration." pp. 60, February 2009.

• Helena Jansová

  1. Helena Jansová. "Reconstruction of 3D surface from colonoscopic video." pp. 79, May 2008.

• Marek Jasanský

  1. Jasanský Marek. "Paralelizace řešení přímého problému EEG rekonstrukce metodou BEM." pp. 44, June 2007.

• Sumit Kaushik

  1. Baručić D., Kaushik S., Kybic J., Stanková J., Džubák P. and Hajdúch M.. "Characterization of drug effects on cell cultures from phase-contrast microscopy images." Computers in Biology and Medicine, 2022.
  2. Kaushik S., Majtan B., Holaj R., Baručić D., Kološová B., Widimský J. and Kybic J.. "The effect of primary hyperaldosteronism on carotid artery texture in ultrasound images." Diagnostics, vol. 12, no. 12, 2022.
  3. Temesgen Bihonegn, Sumit Kaushik, Avinash Bansal, Lubomír Vojtíek and Jan Slovák. "Geodesic fiber tracking in white matter using activation function." Computer Methods and Programs in Biomedicine, vol. 208, pp. 106283, 2021.
  4. Bansal Avinash, Kaushik Sumit, Bihonegn Temesgen and Slovak Jan. "Geodesic ray-tracing in white matter fiber crossing region using decomposition of 4th order tensor." 17th International Symposium on Medical Information Processing and Analysis, vol. 12088, pp. 228-235, 2021.
  5. Kaushik S., Kybic J., Bansal A., Bihonegn T. and Slovák J.. "Potential biomarkers from positive definite 4th order tensors in HARDI." ISBI: IEEE 18th International Symposium on Biomedical Imaging, pp. 1003-1006, 2021.
  6. Bihonegn Temesgen Tsegaye, Bansal Avinash, Slovák Jan and Kaushik Sumit. "4th order tensors for multi-fiber resolution and segmentation in white matter." 2020 7th International Conference on Biomedical and Bioinformatics Engineering, pp. 36-42, 2020.

• Tomáš Kazmar

  1. Kazmar T. and Kybic J.. "Opacity Quantification In Cardiac Angiogram Sequences." BIOSIGNAL: Analysis of Biomedical Signals and Images, pp. 66, June 2008.
  2. Tomáš Kazmar. "Opacity Quantification in Cardiac Angiogram Sequence." pp. 106, May 2008.

• Martin Kostelanský

  1. Kostelanský M.. "Localization and segmentation of in-vivo ultrasound carotid artery images." 2021.

• Pavlína Koutecká

  1. Koutecká P.. "Automatic Detection of Metastases in Whole-Slide Lymph Node Images Using Deep Neural Networks." 2020.

• Jakub Krátký

  1. Jan Kybic and Jakub Krátký. "Discrete curvature calculation for fast level set segmentation." ICIP: International Conference on Image Processing, pp. 4404, November 2009.
  2. Krátký Jakub and Kybic Jan. "Three-dimensional segmentation of bones from CT and MRI using fast level sets." SPIE MI 2008: Proceedings of the SPIE Medical Imaging 2008 Conference, vol. 6914, pp. 10, February 2008.

• Lukáš Kunt

  1. Kunt L.. "Dental caries detection from bitewing X-ray images." 2022.

• David Kunz

  1. Kunz D.. "Robust and Fast Local All Pass Image Registration." 2020.

• Jan Kúdelka

  1. Kúdelka J.. "Classification of tumor type from histopathological images." 2021.

• Jakub Maly

  1. Malý J.. "Automatic event recognition for Higgs boson detection." 2020.

• Ana Manzano

  1. Kostelanský M., Manzano-Rodríguez A., Kybic J., Hekrdla M., Dvorský O., Kozel J., Baurová P., Pakizer D. and Školoudík D.. "Differentiating between stable and progressive carotid atherosclerotic plaques from in-vivo ultrasound images using texture descriptors." SIPAIM: International Symposium on Medical Information Processing and Analysis, 2021.

• Francisco Martínez

  1. Martínez F., Kybic J., Lambert L. and Mecková Z.. "Fully-automated classification of bone marrow infiltration in low-dose CT of patients with multiple myeloma based on probabilistic density model and supervised learning." Computers in Biology and Medicine, vol. 71, pp. 57-66, April 2016.
  2. Francisco Martínez-Martínez, Jan Kybic and Lukas Lambert. "Automatic detection of bone marrow infiltration by multiple myeloma detection in low-dose CT." International Conference in Image Processing (ICIP), vol. , no. , pp. 4813-4817, September 2015.
  3. Martínez Francisco Martínez, Kybic Jan and Sofka Michal. "Malicious traffic detection using active learning." no. CTU-CMP-2015-14, pp. 7, November 2015.

• Jiří Mazanec

  1. Jiří Mazanec. "Program pro prohlížení a segmentaci 3D MRI dat." pp. 53, May 2008.

• Hana Mertanová

  1. Mertanová H.. "Cell segmentation in microscopy using a reference modality." 2021.

• Rodrigo Uriel Nava

  1. Olveres J., Nava R., Escalante-Ramirez B., Vallejo E. and Kybic J.. "Left ventricle Hermite-based segmentation." Computers in Biology and Medicine, vol. 87, pp. 236-249, 2017.
  2. Borovec J., Kybic J. and Nava R.. "Detection and localization of Drosophila egg chambers in microscopy images." MLMI: Machine learning in medical imaging (MICCAI workshop), pp. 19-26, September 2017.(Accepted)
  3. Nava R., Gonzáles G., Kybic J. and Escalante-Ramírez Boris. "Characterization of Hematologic Malignancies based on Discrete Orthogonal Moments." IPTA: International Conference on Image Processing Theory, Tools and Applications, pp. 1-6, December 2016.
  4. Carbajal-Degante E., Nava R., Olveres J., Escalante-Ramírez B. and Kybic J.. "Texel-based Image Classification with Orthogonal Bases." Proceedings of SPIE Photonics Europe, pp. 98961K, April 2016.
  5. Nava Rodrigo, Olveres Jimena, Kybic Jan, Escalante-Ramíres Boris and Cristóbal Gabriel. "Feature Ensemble for Quantitative Analysis of Emphysema in CT imaging." International Conference on E-Health and Bioengineering Conference (EHB), pp. 1-4, November 2015.(Accepted)
  6. Nava Rodrigo, González Germán, Kybic Jan and Escalante-Ramírez Boris. "Classification of Tumor Epithelium and Stroma in Colorectal Cancer based on Discrete Tchebichef Moments." Clinical Image-Based Procedures. Translational Research in Medical Imaging (MICCAI workshop), vol. 9401, pp. 79-87, October 2015.(Accepted)
  7. Nava Rodrigo and Kybic Jan. "Supertexton-based segmentation in early Drosophila oogenesis." International Conference in Image Processing (ICIP), pp. 2656-2659, 2015.

• Petr Novota

  1. Novota P.. "Rain intensity estimation from CML link data." 2022.

• Radka Olyšarová

  1. Olyšarová R.. "Automatic estimation of hdEEG electrode positions." 2021.

• Marián Pauco

  1. Marián Pauco. "Cryogel phantoms for ultrasound elastography." pp. 83, February 2009.
  2. Pauco Marian and Kybic Jan. "Výroba kryogelových fantómov pre ultrazvukovú elastografiu." no. 29, pp. 20, April 2008.

• Jan Petr

  1. Petr Jan, Kybic Jan, Bock Michael, Müller Sven and Hlaváč Václav. "Parallel Image Reconstruction Using B-Spline Approximation (PROBER)." Magnetic Resonance in Medicine, vol. 58, no. 9, pp. 582-591, September 2007.
  2. Petr Jan and Kybic Jan. "Continuous criterion for parallel MRI reconstruction using B-spline approximation (PROBER)." Proceedings of SPIE Medical Imaging, vol. 6512, pp. 43-53, February 2007.
  3. Petr Jan, Kybic Jan, Hlaváč Václav, Müller Sven and Bock Michael. "Fast Parallel MRI Reconstruction Using B-spline Approximation (PROBER)." Proceedings of SPIE Medical Imaging, vol. 6142, pp. 1251-1262, February 2006.
  4. Petr Jan, Kybic Jan, Müller Sven, Bock Michael and Hlaváč Václav. "Parallel MRI Reconstruction Using B-Spline Approximation." ISMRM '05: Proceedings of the 13th Scientific Meeting and Exhibition of International Society for Magnetic Resonance in Medicine, vol. 13, pp. 2421, May 2005.
  5. Petr Jan, Kybic Jan and Hlaváč Václav. "Parallel Magnetic Resonance Imaging Reconstruction." CTU 2006: Proceedings of the Czech Technical University Workshop 2006, vol. 10, pp. 134-136, February 2006.
  6. Petr Jan. "Parallel Magnetic Resonance Imaging Reconstruction." pp. 129, October 2007.
  7. Petr Jan, Kybic Jan and Hlaváč Václav. "Parallel MRI Reconstruction using B-splines." no. K333-19/04, CTU-CMP-2004-09, pp. 12, July 2004.

• Bohdan Petryshak

  1. Chalupský J., Vozda V., Hering J., Kybic J., Burian T., Dziarzhytski S., Frantálová K., Hájková V., Jelínek Š, Juha L., Keitel B., Kuglerová Z., Kuhlmann M., Petryshak B., Ruiz-Lopez M., Vyšín L., Wodzinski T. and Plönjes E.. "Deep learning for laser beam imprinting." Optics Express, 2023.(Accepted)
  2. Petryshak B.. "Segmentation using CNN and shape priors." 2019.
  3. Juránová K., Burian T., Hájková V., Hošek J., Juha L., Kybic J., Nemcová Š., Petryshak B., Vozda V., Vyšín L. and Chalupský J.. "AbloCAM: a versatile optomechanical, semi-automated tool for an in situ characterization and optimization of focused XUV/x-ray laser beam." SPIE: Optics Damage and Materials Processing by EUV/X-ray Radiation VII, vol. 11035, 2019.

• Miguel Amável Pinheiro

  1. Glowacki P., Pinheiro M. A., Mosinska A., Türetken E., Lebrecht D., Sznitman R., Holtmaat A., Kybic J. and Fua P.. "Reconstructing Evolving Tree Structures in Time Lapse Sequences by Enforcing Time-Consistency." Trans. Pattern Analysis Machine Intelligence, vol. 40, no. 3, pp. 755-761, March 2018.
  2. Pinheiro M. A., Kybic J. and Fua P.. "Geometric Graph Matching Using Monte Carlo Tree Search." Trans. Pattern Analysis Machine Intelligence, vol. 39, no. 11, pp. 2171-2185, 2017.
  3. Serradell Eduard, Amável Pinheiro Miguel, Sznitman Raphael, Kybic Jan, Moreno-Noguer Francesc and Fua Pascal. "Non-Rigid Graph Registration using Active Testing Search." IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 37, no. 3, pp. 625-638, March 2015.
  4. Pinheiro M. A. and Kybic J.. "Incremental B-spline deformation model for geometric graph matching." ISBI, pp. 1079-1082, April 2018.
  5. Amável Pinheiro Miguel and Kybic Jan. "Geometrical Graph Matching using Monte Carlo Tree Search." International Conference in Image Processing (ICIP), vol. , pp. 3145-3149, Septemper 2015.
  6. Amável Pinheiro Miguel and Kybic Jan. "Path Descriptors for Geometric Graph Matching and Registration." International Conference on Image Analysis and Recognition (ICIAR), pp. 3-11, October 2014.
  7. Glowacki Przemislaw, Amável Pinheiro Miguel, Turetken Engin, Sznitman Raphael, Lebrecht Daniel, Kybic Jan, Hotlmaat Anthony and Fua Pascal. "Reconstructing Evolving Tree Structures in Time Lapse Sequences." Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR), pp. 3035-3042, June 2014.
  8. Pinheiro Miguel Amável, Sznitman Raphael, Serradell Eduard, Kybic Jan, Moreno-Noguer Francesc and Fua Pascal. "Active Testing Search for Point Cloud Matching." Information Processing in Medical Imaging, vol. 7917, pp. 572-583, July 2013.
  9. Pinheiro M. A.. "Graph and Point Cloud Matching for Image Registration." 2017.
  10. Pinheiro Miguel and Kybic Jan. "Graph and point cloud registration." no. CTU-CMP-2013-02, pp. 27, January 2013.

• Vojtěch Poříz

  1. Poříz V.. "Diabetic Retinopathy Detection Using Neural Networks." 2020.

• Sudershan Sundararajan

  1. Sudershan Sundararajan. "Colour Image Registration." 2005.

• Jiří Svoboda

  1. Svoboda Jiří. "Porovnání metod odhadování entropie pro registraci obrazů." pp. 126, May 2007.

• Marián Uherčík

  1. Marián Uherčík, Jan Kybic, Hervé Liebgott and Christian Cachard. "Model Fitting Using RANSAC for Surgical Tool Localization in 3-D Ultrasound Images." IEEE Transactions on Biomedical Engineering, vol. 57, no. 8, pp. 1907-1916, Aug. 2010.
  2. Martin Barva, Marián Uherčík, Jean-Martial Mari, Jan Kybic, Jean-René Duhamel, Hervé Liebgott, Václav Hlaváč and Christian Cachard. "Parallel Integral Projection Transform for Straight Electrode Localization in 3-D Ultrasound Images." IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control (UFFC), vol. 55, no. 7, pp. 1559-1569, July 2008.
  3. F. Gaufillet, H. Liebgott, M. Uherčík, F. Cervenansky, J. Kybic and C. Cachard. "3D Ultrasound real-time monitoring of surgical tools." IEEE Ultrasonics Symposium, pp. 2360-2363, October 2010.(Accepted)
  4. Marián Uherčík, Jan Kybic, Christian Cachard and Hervé Liebgott. "Line filtering for detection of microtools in 3D ultrasound data." Ultrasonics Symposium (IUS), 2009 IEEE International, pp. 594-597, September 2009.
  5. Marián Uherčík, Hervé Liebgott, Jan Kybic and Christian Cachard. "Needle localization methods in 3D ultrasound data." 2009 ICU International Congress on Ultrasonics, pp. 4, January 2009.
  6. Marián Uherčík, Jan Kybic, Hervé Liebgott and Christian Cachard. "Multi-resolution Parallel Integral Projection for Fast Localization of a Straight Electrode in 3D Ultrasound Images." Proceedings of 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp. 33-36, May 2008.
  7. Marián Uherčík. "Surgical Tools Localization in 3D Ultrasound Images." pp. 135, April 2011.
  8. Uherčík Marián, Kybic Jan, Liebgott Hervé and Cachard Christian. "Model Fitting using RANSAC for Surgical Tool Localization in 3D Ultrasound Images." no. CTU-CMP-2009-11, pp. 7, September 2009.
  9. Uherčík Marián. "Surgical Tool Localization in 3D Ultrasound Data - PhD Thesis Proposal." no. CTU-CMP-2009-08, pp. 47, August 2009.

• Jef Vandemeulebroucke

  1. J. Vandemeulebroucke, O. Bernard, S. Rit, J. Kybic, P. Clarysse and D. Sarrut. "Automated Segmentation of a Motion Mask to Preserve Sliding Motion in Deformable Registration of Thoracic CT." Medical Physics, vol. 39, no. 2, pp. 1006-1015, 2012.
  2. J. Vandemeulebroucke, S. Rit, J. Kybic, P. Clarysse and D. Sarrut. "Spatio-Temporal Motion Estimation for Respiratory-Correlated Imaging of the Lungs." Medical Physics, vol. 38, no. 1, pp. 166-178, 2011.
  3. Jef Vandemeulebroucke, Jan Kybic, Patrick Clarysse and David Sarrut. "Respiratory Motion Estimation from Cone-Beam Projections Using a Prior Model." Medical Image Computing and Computer-Assisted Intervention - MICCAI 2009, vol. 5762, pp. 365-372, September 2009.
  4. Jef Vandemeulebroucke, Patrick Clarysse, Jan Kybic and David Sarrut. "Estimating Respiratory Motion from Cone-Beam Projections." Proceedings of the First International Workshop on Pulmonary Image Analysis, pp. 83-92, September 2008.
  5. Jef Vandemeulebroucke. "Lung Motion Modelling and Estimation for Image Guided Radiation Therapy." pp. 148, July 2010.

• François Varray

  1. Thomas Dietenbeck, François Varray, Jan Kybic, Olivier Basset and Christian Cachard. "Neuromuscular fiber segmentation through particle filtering and discrete optimization." SPIE Medical Imaging, vol. 9034, pp. 90340B, February 2014.(Accepted)
  2. François Varray, Jan Kybic, Olivier Basset and Christian Cachard. "Neuromuscular fiber segmentation using particle filtering and discrete optimization." MICCAI: Histopathology Image Analysis workshop., pp. 48-59, October 2012.
  3. Varray F., Cachard C., Kybic J., Novell A., Bouakaz A. and Basset O.. "A Multi-Frequency Approach to Increase the Native Resolution of Ultrasound Images." EUSIPCO 2012: 20th European Signal Processing Conference, pp. 2733-2737, August 2012.

• Guorong Yu

  1. Borovec J., Kybic J., Arganda-Carreras I., Sorokin D. V., Bueno G., Khvostikov A. V., Bakas S., Chang E. I., Heldmann S., Kartasalo K., Latonen L., Lotz J., Noga M., Pati S., Punithakumar K., Ruusuvuori P., Skalski A., Tahmasebi N., Valkonen M., Venet L., et al. "ANHIR: Automatic Non-rigid Histological Image Registration Challenge." IEEE Transactions on Medical Imaging, no. 10, pp. 3042-3052, October 2020.
  2. Uhercik Marian, Kybic Jan, Zhao Yue, Cachard Christian and Liebgott Herve. "Line Filtering for Surgical Tool Localization in 3D Ultrasound Images." Computers in Biology and Medicine, vol. 43, no. 12, pp. 2036-2045, December 2013.
  3. Quellec Gwenole, Lee Kyungmoo, Dolejší Martin, Garvin Mona K., Abràmoff Michael D. and Sonka Milan. "Three-Dimensional Analysis of Retinal Layer Texture: Identification of Fluid-Filled Regions in SD-OCT of the Macula." IEEE Transactions on Medical Imaging, vol. 29, no. 6, pp. 1321-1330, June 2010.

• Ivo Čermák

  1. Ivo Čermák. "The class of oil purity II." pp. 78, February 2009.

• Vít Špringl

  1. Vít Špringl. "Automatic Malaria Diagnosis through Microscopy Imaging." pp. 127, February 2009.

• Jan Švihlík

  1. Dvořák J., Švihlík J., Kybic J., Radochová B., Janáček J., Kukal J., Borovec J. and Habart D.. "Volume estimation from single images: an application to pancreatic islets." Image Analysis & Stereology, vol. 37, no. 3, pp. 191-204, 2018.
  2. Borovec J., Švihlík J., Kybic J. and Habart D.. "Supervised and unsupervised segmentation using superpixels, model estimation, and Graph Cut." Journal of Electronic Imaging, 2017.
  3. Habart David, Švihlík Jan, Schier Jan, Cahová Monika, Girman Peter, Zacharovová Klára, Berková Zuzana, Kříž Jan, Fabryová Eva, Kosinová Lucie, Papáčková Zuzana, Kybic Jan and Saudek František. "Automated Analysis of Microscopic Images of Isolated Pancreatic Islets." Cell Transplantation, no. 12, pp. 2145-2156, December 2016.
  4. Dvořák J., Švihlík J., Habart D. and Kybic J.. "Comparison of volume estimation methods for pancreatic islet cells." Medical Imaging 2016: Image Processing, vol. 9784, pp. , 2016.
  5. Švihlík J., Kybic J. and Habart D.. "Automated separation of merged Langerhans islets." Medical Imaging 2016: Image Processing, vol. 9784, pp. , 2016.
  6. Švihlík J., Kybic J., Dvořák J., Habart D., Hlushak H. and Radochová B.. "Langerhans islet volume estimation from 3D optical projection tomography." MCBMIAA2016: Workshop on Mathematical and Computational Methods in Biomedical Imaging and Image Analysis, November 2016.(Accepted)
  7. Švihlík J., Kybic J., Habart D., Berková Z., Girman P., Kříž J. and Zacharovová K.. "Classification of microscopy images of Langerhans islets." Medical Imaging 2014: Image Processing, vol. 9034, pp. 1-8, February 2014.
  8. Habart D., Švihlík J., Girman P., Zacharovová K., Berková Z., Kříž J, Papáčková Z., Cahová M., Kybic J. and Saudek F.. "Assessment of a Novel Trainable Algorithm for Automated Segmentation of Multiple Islet Images.." Abstract book of 4th Joint EPITA and AIDPIT Winter Symposium, vol. , pp. 36-36, January 2014.